The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyze high-throughput sequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.

• Site web : https://www.broadinstitute.org/gatk/
• Versions installées :
  • 3.2-2

Extrait de la licence :

LICENSEE agrees to include appropriate attribution if any results obtained from use of the PROGRAM are included in any publication.

Pour sélectionner la version voulue : utiliser les modules

gatk a été placé dans l'ensemble bio

Pour charger l'ensemble des logiciels de Bio, dans leurs versions par défaut :

module load bio

Pour charger seulement l'environnement de bedtools en version 3.2-2 :

module load bio/gatk/3.2-2